C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC63-like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155410 Sec63-002 ENSMUSG00000019802 10090 + 10:42761615-42830392 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000155410
Transcript ID Testis
ENSMUST00000155410 5.534±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0006OL CIL_0006OL_0002 CGP 10:42761496-42960780

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251195 CLSPN-001 protein_coding Homo_sapiens 0.00009 55
ENST00000318121 CLSPN-005 protein_coding Homo_sapiens 0.00009 55
ENST00000369002 SEC63-001 protein_coding Homo_sapiens 0 2793
ENST00000373220 CLSPN-003 protein_coding Homo_sapiens 0.00009 55
ENST00000425785 SEC63P1-001 processed_pseudogene Homo_sapiens 0 1500
ENST00000429168 SEC63-007 protein_coding Homo_sapiens 0 706
ENST00000446496 SEC63-010 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000459782 SEC63-004 retained_intron Homo_sapiens 0 797
ENST00000460009 SEC63-002 processed_transcript Homo_sapiens 0 209
ENST00000466419 SEC63-003 retained_intron Homo_sapiens 0 472
ENST00000473746 SEC63-008 retained_intron Homo_sapiens 0 484
ENST00000484803 SEC63-005 retained_intron Homo_sapiens 0 752
ENST00000489455 SEC63-006 retained_intron Homo_sapiens 0 499
ENST00000520551 CLSPN-004 protein_coding Homo_sapiens 0.00009 55

Loading