C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155520 Bcas2-005 ENSMUSG00000005687 10090 + 3:103171762-103178447 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000155520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000155520 4.143±0.81 4.905±0.00 12.744±2.56 58.130±55.25 7.166±2.77 4.964±0.36 5.301±1.73 19.259±22.36 6.621±0.34 8.124±1.97 24.955±48.02 87.470±92.33 253.367±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RY CIL_0003RY_0002 CGP 3:103102604-103179166
CIL_0006WV CIL_0006WV_0002 CGP 3:103171655-103358768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369541 BCAS2-001 protein_coding Homo_sapiens 0 704
ENST00000416374 BCAS2P3-001 processed_pseudogene Homo_sapiens 0 427
ENST00000425064 BCAS2P2-001 processed_pseudogene Homo_sapiens 0 593
ENST00000485021 BCAS2-002 processed_transcript Homo_sapiens 0 466

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