C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dopa decarboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155690 Ddc-002 ENSMUSG00000020182 10090 - 11:11846658-11890369 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverOvaryENSMUST00000155690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Ovary
ENSMUST00000155690 0.080±0.00 3.994±0.57 0.672±0.00 2.470±0.00 0.362±0.00 9.481±2.16 13.017±0.00 0.229±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0002 VISTA 11:11227967-11828770
CIL_0008P3 CIL_0008P3_0002 VISTA 11:11375621-11977027
CIL_0008XT CIL_0008XT_0002 VISTA 11:11399170-12000205
CIL_0007SD CIL_0007SD_0002 VISTA 11:11453227-12053958
CIL_00089U CIL_00089U_0002 VISTA 11:11536402-12137998
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_000641 CIL_000641_0002 CGP 11:11787431-11898144
CIL_0004WV CIL_0004WV_0003 CGP 11:11814101-12038683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004058 IDA aromatic-L-amino-acid decarboxylase activity
GO:0005737 IDA cytoplasm
GO:0006520 IEA cellular amino acid metabolic process
GO:0009636 IDA response to toxic substance
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357936 DDC-001 protein_coding Homo_sapiens 0 797
ENST00000380984 DDC-014 protein_coding Homo_sapiens 0 797
ENST00000444124 DDC-002 protein_coding Homo_sapiens 0 797
ENST00000444733 DDC-008 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000489162 DDC-012 processed_transcript Homo_sapiens 0 571
ENST00000617822 DDC-202 protein_coding Homo_sapiens 0 625
ENST00000622873 DDC-203 protein_coding Homo_sapiens 0 486

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