C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156837 Cops3-004 ENSMUSG00000019373 10090 - 11:59821360-59836935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000156837
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000156837 14.903±0.00 15.078±0.00 38.077±2.30 37.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_00040N CIL_00040N_0002 CGP 11:59791408-59839838
CIL_0000NX CIL_0000NX_0002 CGP 11:59817795-59880968

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268717 COPS3-001 protein_coding Homo_sapiens 0 715
ENST00000417352 COPS3-008 protein_coding Homo_sapiens 0 472
ENST00000439936 COPS3-002 protein_coding Homo_sapiens 0 472
ENST00000462236 COPS3-003 retained_intron Homo_sapiens 6e-18 95
ENST00000477299 COPS3-006 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000486810 COPS3-004 retained_intron Homo_sapiens 0 675
ENST00000492672 COPS3-007 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000495640 COPS3-005 nonsense_mediated_decay Homo_sapiens 1.96182e-44 182
ENST00000539941 COPS3-014 protein_coding Homo_sapiens 0 715
ENST00000577210 COPS3-019 nonsense_mediated_decay Homo_sapiens 0 669
ENST00000577246 COPS3-015 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000578317 COPS3-013 nonsense_mediated_decay Homo_sapiens 0 715
ENST00000583160 COPS3-018 protein_coding Homo_sapiens 0 217
ENST00000584216 COPS3-016 nonsense_mediated_decay Homo_sapiens 0 562

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