C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TruB pseudouridine (psi) synthase homolog 2 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156846 Trub2-003 ENSMUSG00000039826 10090 - 2:29774684-29787660 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaENSMUST00000156846
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta
ENSMUST00000156846 4.933±1.81 1.617±0.16 4.615±1.41 1.488±0.15 1.727±0.41 1.891±0.13 3.311±0.77 1.644±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E8 CIL_0007E8_0002 CGP 2:29761224-29797935

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372890 TRUB2-001 protein_coding Homo_sapiens 0 521
ENST00000460320 TRUB2-003 processed_transcript Homo_sapiens 0 503

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