C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 1, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156899 Tpm1-005 ENSMUSG00000032366 10090 - 9:67029920-67032825 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521
CIL_0004OW CIL_0004OW_0002 CGP 9:66955393-67049406
CIL_0005H2 CIL_0005H2_0002 CGP 9:67022590-67559703

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267996 TPM1-005 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000288398 TPM1-001 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000317516 TPM1-016 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000334895 TPM1-011 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000357980 TPM1-008 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000358278 TPM1-018 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000403994 TPM1-002 protein_coding Homo_sapiens 0 189
ENST00000404484 TPM1-012 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000558072 TPM1-025 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000558264 TPM1-017 nonsense_mediated_decay Homo_sapiens 1.4013e-45 189
ENST00000558314 TPM1-006 retained_intron Homo_sapiens 0.0000004 60
ENST00000558347 TPM1-009 nonsense_mediated_decay Homo_sapiens 2.8026e-45 187
ENST00000558544 TPM1-013 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000558868 TPM1-021 retained_intron Homo_sapiens 0.0000002 60
ENST00000559108 TPM1-031 retained_intron Homo_sapiens 0 191
ENST00000559281 TPM1-015 protein_coding Homo_sapiens 0 189
ENST00000559397 TPM1-010 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000559556 TPM1-028 protein_coding Homo_sapiens 0 189
ENST00000559831 TPM1-029 nonsense_mediated_decay Homo_sapiens 0.0000002 60
ENST00000560615 TPM1-022 protein_coding Homo_sapiens 0.0000002 60
ENST00000560959 TPM1-014 protein_coding Homo_sapiens 0 206
ENST00000560970 TPM1-003 protein_coding Homo_sapiens 0 189
ENST00000560975 TPM1-007 retained_intron Homo_sapiens 5.60519e-45 187
ENST00000561266 TPM1-027 protein_coding Homo_sapiens 0 189
ENST00000561395 TPM1-033 nonsense_mediated_decay Homo_sapiens 0 189

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