C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth factor independent 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159263 Gfi1-003 ENSMUSG00000029275 10090 - 5:107721606-107726036 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverLungOvaryENSMUST00000159263
Transcript ID Adrenal Brain Breast Kidney Liver Lung Ovary
ENSMUST00000159263 0.132±0.04 0.021±0.00 1.227±0.00 0.113±0.06 2.066±0.00 0.799±0.00 2.013±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZO CIL_0005ZO_0002 CGP 5:107597373-107726036
CIL_0007C9 CIL_0007C9_0003 CGP 5:107716657-107875107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007638 IMP mechanosensory behavior
GO:0009996 IMP negative regulation of cell fate specification
GO:0042472 IMP inner ear morphogenesis
GO:0042491 IMP auditory receptor cell differentiation
GO:0042660 IMP positive regulation of cell fate specification
GO:0045165 IMP cell fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294702 GFI1-002 protein_coding Homo_sapiens 0 453
ENST00000370332 GFI1-001 protein_coding Homo_sapiens 0 453
ENST00000427103 GFI1-201 protein_coding Homo_sapiens 0 453

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