C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16238
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159343 Gm16238-001 ENSMUSG00000089988 10090 - 3:127691935-127692522 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159343 0.117±0.06 0.187±0.01 0.423±0.16 0.126±0.09 0.213±0.09 0.327±0.22 0.161±0.08 0.099±0.00 0.082±0.03 0.286±0.07 0.103±0.01 0.406±0.16 0.153±0.08 0.146±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0002 VISTA 3:127326841-127927904
CIL_00080F CIL_00080F_0002 VISTA 3:127613726-128215301
CIL_0007P9 CIL_0007P9_0002 UCNEbase 3:127625906-129219414

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225430 RPL19-001 protein_coding Homo_sapiens 0 745
ENST00000415648 RPL19P20-001 processed_pseudogene Homo_sapiens 0 544
ENST00000424919 RPL19P21-001 processed_pseudogene Homo_sapiens 0 667
ENST00000429272 AC068137.13-001 processed_pseudogene Homo_sapiens 0 595
ENST00000432746 RPL19P12-001 processed_pseudogene Homo_sapiens 0 693
ENST00000433839 RP11-159H3.1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000438827 RP11-157F20.1-001 processed_pseudogene Homo_sapiens 0 553
ENST00000472309 RP11-84H6.1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000477964 RP11-889L3.1-001 processed_pseudogene Homo_sapiens 0 656
ENST00000495884 RPL19P14-001 processed_pseudogene Homo_sapiens 0 499
ENST00000495944 RPL19P11-001 processed_pseudogene Homo_sapiens 0 534
ENST00000498753 RP11-343B5.1-001 processed_pseudogene Homo_sapiens 0 577
ENST00000577741 RPL19-004 retained_intron Homo_sapiens 0 420
ENST00000579260 RPL19-002 protein_coding Homo_sapiens 0 741
ENST00000579374 RPL19-006 protein_coding Homo_sapiens 0 723
ENST00000580333 RPL19-005 retained_intron Homo_sapiens 0 333
ENST00000582193 RPL19-003 protein_coding Homo_sapiens 0 737
ENST00000585199 RPL19-007 protein_coding Homo_sapiens 0 403

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