C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 51 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159832 Vps51-001 ENSMUSG00000024797 10090 - 19:6067842-6080324 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000159832
Transcript ID Testis
ENSMUST00000159832 7.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000938 ISS GARP complex
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005794 ISS Golgi apparatus
GO:0006869 IEA lipid transport
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0042147 ISS retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279281 VPS51-001 protein_coding Homo_sapiens 0 2857
ENST00000415407 AP006294.2-001 processed_pseudogene Homo_sapiens 0 353
ENST00000449110 AC079781.8-001 processed_pseudogene Homo_sapiens 0 375
ENST00000467186 GS1-388B5.8-001 processed_pseudogene Homo_sapiens 0 375
ENST00000481669 RP11-413E6.2-001 processed_pseudogene Homo_sapiens 0 374
ENST00000507042 RP11-489M13.2-001 processed_pseudogene Homo_sapiens 0 353
ENST00000509725 RP11-1396O13.22-001 processed_pseudogene Homo_sapiens 0 342
ENST00000510116 RP11-747H12.4-001 processed_pseudogene Homo_sapiens 0 368
ENST00000511578 RP11-93K22.7-001 processed_pseudogene Homo_sapiens 0 375
ENST00000524675 RP11-684B2.5-001 processed_pseudogene Homo_sapiens 0 370
ENST00000526578 VPS51-003 protein_coding Homo_sapiens 0 527
ENST00000526613 RP11-303G3.10-001 processed_pseudogene Homo_sapiens 0 313
ENST00000526806 AF238378.7-001 processed_pseudogene Homo_sapiens 0 359
ENST00000526856 VPS51-010 protein_coding Homo_sapiens 0 701
ENST00000527532 RP5-901A4.5-001 processed_pseudogene Homo_sapiens 0 375
ENST00000527646 VPS51-013 processed_transcript Homo_sapiens 0 2362
ENST00000528050 VPS51-016 retained_intron Homo_sapiens 0 473
ENST00000528588 VPS51-015 protein_coding Homo_sapiens 0 534
ENST00000529180 VPS51-007 protein_coding Homo_sapiens 0 686
ENST00000530773 VPS51-011 protein_coding Homo_sapiens 0 492
ENST00000530817 RP11-481A20.8-001 processed_pseudogene Homo_sapiens 0 355
ENST00000531146 VPS51-008 retained_intron Homo_sapiens 0 457
ENST00000533487 VPS51-002 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000533656 VPS51-005 retained_intron Homo_sapiens 0 473
ENST00000533827 VPS51-012 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000534124 VPS51-006 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000534557 VPS51-004 protein_coding Homo_sapiens 0 1033
ENST00000534591 VPS51-009 retained_intron Homo_sapiens 0 462
ENST00000545435 RP11-113C12.8-001 processed_pseudogene Homo_sapiens 0 370
ENST00000565115 RP11-382N13.6-001 processed_pseudogene Homo_sapiens 0 374

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