C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16139
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160015 Gm16139-001 ENSMUSG00000089861 10090 + 16:16542323-16542742 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000160015
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000160015 0.481±0.11 0.116±0.00 0.182±0.00 0.729±0.37 0.244±0.00 0.165±0.00 0.048±0.02 0.234±0.00 0.410±0.00 0.148±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 460
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 460
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 398
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 460
ENST00000422792 AC079807.3-001 processed_pseudogene Homo_sapiens 0 233
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 388
ENST00000434254 AC008072.1-001 processed_pseudogene Homo_sapiens 1e-20 104
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 453
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 359
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 350
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 399
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000471772 RPS27A-009 retained_intron Homo_sapiens 2e-17 94
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 359
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 466
ENST00000494756 RPS27A-012 retained_intron Homo_sapiens 2e-17 94
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 0 195
ENST00000515536 RP11-166J22.1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 466
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 0 195

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