C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EGF-like, fibronectin type III and laminin G domains
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160207 Egflam-003 ENSMUSG00000042961 10090 - 15:7206583-7398395 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartOvaryPlacentaTestisENSMUST00000160207
Transcript ID Adrenal Brain Breast Colon Heart Ovary Placenta Testis
ENSMUST00000160207 0.574±0.12 0.353±0.00 1.184±0.00 0.378±0.00 0.390±0.09 3.473±0.57 0.543±0.00 0.642±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W3 CIL_0008W3_0002 VISTA 15:7122223-7723664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322350 EGFLAM-001 protein_coding Homo_sapiens 0 3110
ENST00000336740 EGFLAM-002 protein_coding Homo_sapiens 0 2446
ENST00000354891 EGFLAM-004 protein_coding Homo_sapiens 0 3249
ENST00000397202 EGFLAM-003 protein_coding Homo_sapiens 0 1546
ENST00000397210 EGFLAM-005 protein_coding Homo_sapiens 0 833
ENST00000506135 EGFLAM-009 protein_coding Homo_sapiens 0 691
ENST00000513131 EGFLAM-011 retained_intron Homo_sapiens 0 418
ENST00000514476 EGFLAM-010 protein_coding Homo_sapiens 0 761

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