C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha-kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160586 Alpk1-003 ENSMUSG00000028028 10090 - 3:127670399-127780527 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160586 0.867±0.06 0.485±0.22 4.455±1.65 0.365±0.14 0.949±0.51 1.435±0.61 0.391±0.18 0.248±0.10 0.207±0.12 0.872±0.07 0.172±0.06 0.918±0.30 0.199±0.13 0.597±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0002 VISTA 3:127326841-127927904
CIL_00080F CIL_00080F_0002 VISTA 3:127613726-128215301
CIL_0007P9 CIL_0007P9_0002 UCNEbase 3:127625906-129219414

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000177648 ALPK1-001 protein_coding Homo_sapiens 0 965
ENST00000458497 ALPK1-201 protein_coding Homo_sapiens 0 965
ENST00000504176 ALPK1-202 protein_coding Homo_sapiens 0 965
ENST00000504745 ALPK1-007 retained_intron Homo_sapiens 0 965
ENST00000505127 ALPK1-005 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000508589 ALPK1-015 processed_transcript Homo_sapiens 2e-18 97
ENST00000509688 ALPK1-002 retained_intron Homo_sapiens 0 390
ENST00000509722 ALPK1-008 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000512847 ALPK1-016 retained_intron Homo_sapiens 2e-18 97
ENST00000515330 ALPK1-006 nonsense_mediated_decay Homo_sapiens 0 634

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