C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA adenine dimethylase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160648 Rrnad1-003 ENSMUSG00000004896 10090 - 3:87922601-87930127 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungMuscleOvaryENSMUST00000160648
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Muscle Ovary
ENSMUST00000160648 7.064±1.90 6.261±1.09 11.038±0.52 6.601±0.85 3.046±0.00 4.987±0.41 5.902±0.00 2.721±0.00 8.513±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368216 RRNAD1-001 protein_coding Homo_sapiens 0 922
ENST00000368218 RRNAD1-007 protein_coding Homo_sapiens 0 446
ENST00000476229 RRNAD1-003 protein_coding Homo_sapiens 0 226
ENST00000484742 RRNAD1-002 protein_coding Homo_sapiens 0 424
ENST00000517871 RRNAD1-013 retained_intron Homo_sapiens 0 392
ENST00000519086 RRNAD1-009 protein_coding Homo_sapiens 0 592
ENST00000522237 RRNAD1-011 protein_coding Homo_sapiens 0 387
ENST00000524343 RRNAD1-008 protein_coding Homo_sapiens 0 244

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