C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160852 Sssca1-006 ENSMUSG00000079478 10090 - 19:5728088-5731713 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000160852
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000160852 6.530±0.02 5.695±1.52 14.189±9.07 3.023±0.00 2.091±0.00 3.579±0.35 5.974±2.38 1.779±0.25 7.675±5.04 2.832±1.04 0.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309328 SSSCA1-001 protein_coding Homo_sapiens 0 634
ENST00000449319 FAM89B-002 protein_coding Homo_sapiens 0 758
ENST00000526433 SSSCA1-007 protein_coding Homo_sapiens 0 422
ENST00000526877 SSSCA1-004 protein_coding Homo_sapiens 0 560
ENST00000527920 SSSCA1-005 protein_coding Homo_sapiens 0 326
ENST00000530349 FAM89B-004 protein_coding Homo_sapiens 0 750
ENST00000531405 SSSCA1-002 protein_coding Homo_sapiens 0 634
ENST00000533115 SSSCA1-006 protein_coding Homo_sapiens 0 597

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