C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161113 Stag3-002 ENSMUSG00000036928 10090 + 5:138280509-138312393 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000161113
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000161113 0.072±0.02 0.068±0.00 0.077±0.03 0.541±0.34 0.053±0.05 0.150±0.04 0.020±0.00 0.039±0.02 0.125±0.11 0.053±0.01 0.149±0.06 1.372±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317296 STAG3-001 protein_coding Homo_sapiens 0 1941
ENST00000328453 GATS-011 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000369872 SYPL2-001 protein_coding Homo_sapiens 0.0003 53
ENST00000394018 STAG3-003 protein_coding Homo_sapiens 0 1941
ENST00000426455 STAG3-004 protein_coding Homo_sapiens 0 1941
ENST00000436886 GATS-014 protein_coding Homo_sapiens 0 196
ENST00000440830 STAG3-006 processed_transcript Homo_sapiens 0 1941
ENST00000476057 STAG3-021 retained_intron Homo_sapiens 0 261
ENST00000479359 STAG3-017 retained_intron Homo_sapiens 0 636
ENST00000491498 STAG3-020 processed_transcript Homo_sapiens 0 1941
ENST00000496157 STAG3-002 retained_intron Homo_sapiens 0 845
ENST00000543273 GATS-002 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000615138 STAG3-201 protein_coding Homo_sapiens 0 1956
ENST00000620100 STAG3-202 protein_coding Homo_sapiens 0 1941

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