C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha-kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161239 Alpk1-004 ENSMUSG00000028028 10090 - 3:127724285-127780513 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverTestisENSMUST00000161239
Transcript ID Liver Testis
ENSMUST00000161239 0.132±0.00 1.229±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0002 VISTA 3:127326841-127927904
CIL_00080F CIL_00080F_0002 VISTA 3:127613726-128215301
CIL_0007P9 CIL_0007P9_0002 UCNEbase 3:127625906-129219414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006468 IEA protein phosphorylation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000177648 ALPK1-001 protein_coding Homo_sapiens 0 390
ENST00000458497 ALPK1-201 protein_coding Homo_sapiens 0 451
ENST00000505127 ALPK1-005 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000509688 ALPK1-002 retained_intron Homo_sapiens 0 486
ENST00000515330 ALPK1-006 nonsense_mediated_decay Homo_sapiens 0 451

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