C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: galactose-3-O-sulfotransferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161647 Gal3st4-002 ENSMUSG00000075593 10090 - 5:138264921-138272840 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000161647
Transcript ID Muscle
ENSMUST00000161647 0.537±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005BN CIL_0005BN_0003 CGP 5:138259658-138272840
CIL_0005CG CIL_0005CG_0002 CGP 5:138264921-138280005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001733 IEA galactosylceramide sulfotransferase activity
GO:0005794 IEA Golgi apparatus
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360039 GAL3ST4-001 protein_coding Homo_sapiens 0 1057
ENST00000411994 GAL3ST4-004 protein_coding Homo_sapiens 0 697
ENST00000413800 GAL3ST4-003 protein_coding Homo_sapiens 0 1057
ENST00000423751 GAL3ST4-002 protein_coding Homo_sapiens 0 697
ENST00000460995 GAL3ST4-006 processed_transcript Homo_sapiens 0 303
ENST00000482469 GAL3ST4-007 processed_transcript Homo_sapiens 0 335
ENST00000495882 GAL3ST4-005 retained_intron Homo_sapiens 0 1057
ENST00000498000 GAL3ST4-008 processed_transcript Homo_sapiens 5e-24 115

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