C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 2 (cerebroglycan)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161827 Gpc2-001 ENSMUSG00000029510 10090 - 5:138273655-138280005 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainPlacentaTestisENSMUST00000161827
Transcript ID Bladder Brain Placenta Testis
ENSMUST00000161827 4.777±0.00 148.545±18.06 3.616±0.63 6.005±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005BN CIL_0005BN_0003 CGP 5:138259658-138272840
CIL_0005CG CIL_0005CG_0002 CGP 5:138264921-138280005
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005783 IEA endoplasmic reticulum
GO:0005796 TAS Golgi lumen
GO:0005886 IEA plasma membrane
GO:0007224 IEA smoothened signaling pathway
GO:0030182 IEA neuron differentiation
GO:0031225 IEA anchored component of membrane
GO:0043395 IEA heparan sulfate proteoglycan binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292377 GPC2-001 protein_coding Homo_sapiens 0 1666
ENST00000471050 GPC2-003 processed_transcript Homo_sapiens 0 869
ENST00000471717 GPC2-002 retained_intron Homo_sapiens 0 874
ENST00000480087 GPC2-005 processed_transcript Homo_sapiens 0 453
ENST00000482569 GPC2-009 processed_transcript Homo_sapiens 0 433
ENST00000490629 GPC2-007 retained_intron Homo_sapiens 0 597

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