C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hairless
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163060 Hr-003 ENSMUSG00000022096 10090 + 14:70555900-70573544 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverLungOvaryPlacentaTestisENSMUST00000163060
Transcript ID Adipose Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000163060 2.783±1.56 3.323±0.89 2.686±0.60 0.063±0.05 0.973±0.19 0.933±0.07 0.689±0.61 0.355±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000812 CIL_000812_0002 VISTA 14:70334498-70935318
CIL_0008ZI CIL_0008ZI_0002 VISTA 14:70339990-70941193
CIL_000810 CIL_000810_0002 VISTA 14:70383794-70984839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0016491 IEA oxidoreductase activity
GO:0016604 IDA nuclear body
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312841 HR-008 protein_coding Homo_sapiens 0 2656
ENST00000381418 HR-001 protein_coding Homo_sapiens 0 3051
ENST00000517699 HR-006 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000518461 HR-007 retained_intron Homo_sapiens 0 468
ENST00000522016 HR-009 retained_intron Homo_sapiens 0 403
ENST00000522759 HR-003 retained_intron Homo_sapiens 0 732

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