C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163123 Slc8a1-202 ENSMUSG00000054640 10090 - 17:81388691-81649607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungPlacentaTestisENSMUST00000163123
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Placenta Testis
ENSMUST00000163123 4.674±0.00 0.065±0.03 3.669±0.00 6.567±0.00 1.275±0.00 2.293±0.00 4.237±0.44 0.170±0.09 1.002±0.00 0.409±0.12 0.611±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066Z CIL_00066Z_0002 CGP 17:81026327-81649607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001892 IMP embryonic placenta development
GO:0002026 IMP regulation of the force of heart contraction
GO:0003007 IGI heart morphogenesis
GO:0005432 IDA calcium:sodium antiporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006814 IDA sodium ion transport
GO:0006816 IDA calcium ion transport
GO:0007154 IEA cell communication
GO:0009791 IGI post-embryonic development
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030315 IDA T-tubule
GO:0035050 IMP embryonic heart tube development
GO:0035725 IEA sodium ion transmembrane transport
GO:0042383 IDA sarcolemma
GO:0048747 IGI muscle fiber development
GO:0055013 IMP cardiac muscle cell development
GO:0060048 IGI cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077478 slc8a4a-201 protein_coding Danio_rerio 0 383
ENSDART00000135052 slc8a4a-001 protein_coding Danio_rerio 0 383
ENSDART00000063721 slc8a2b-201 protein_coding Danio_rerio 4e-21 108
ENSDART00000097701 slc8a2b-202 protein_coding Danio_rerio 4e-21 108
ENSDART00000144567 slc8a2b-001 protein_coding Danio_rerio 4e-21 108
ENST00000332839 SLC8A1-201 protein_coding Homo_sapiens 0 2318
ENST00000402441 SLC8A1-006 protein_coding Homo_sapiens 0 2143
ENST00000403092 SLC8A1-010 protein_coding Homo_sapiens 0 2318
ENST00000405269 SLC8A1-012 protein_coding Homo_sapiens 0 2143
ENST00000405901 SLC8A1-003 protein_coding Homo_sapiens 0 3570
ENST00000406391 SLC8A1-202 protein_coding Homo_sapiens 0 2143
ENST00000406785 SLC8A1-005 protein_coding Homo_sapiens 0 2143
ENST00000407929 SLC8A1-011 nonsense_mediated_decay Homo_sapiens 0 2320
ENST00000408028 SLC8A1-013 protein_coding Homo_sapiens 0 3380

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