C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163277 Rhbg-003 ENSMUSG00000001417 10090 - 3:88245195-88287210 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLungOvaryTestisENSMUST00000163277
Transcript ID Adrenal Brain Breast Lung Ovary Testis
ENSMUST00000163277 0.345±0.13 0.028±0.00 0.677±0.00 1.179±0.00 0.537±0.11 0.664±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000451864 RHBG-006 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000537040 RHBG-001 protein_coding Homo_sapiens 0 913
ENST00000612897 RHBG-003 nonsense_mediated_decay Homo_sapiens 0 917
ENST00000613460 RHBG-002 nonsense_mediated_decay Homo_sapiens 0 917
ENST00000618120 RHBG-004 retained_intron Homo_sapiens 0 917
ENST00000620376 RHBG-009 nonsense_mediated_decay Homo_sapiens 0 387

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