C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A)-specific ribonuclease (PARN)-like domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163394 Pnldc1-201 ENSMUSG00000073460 10090 - 17:12888902-12910000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000163394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163394 0.346±0.00 0.430±0.17 0.094±0.02 0.579±0.00 0.675±0.25 0.204±0.09 0.207±0.11 0.245±0.19 0.294±0.20 0.040±0.02 0.850±0.51 0.271±0.11 2.822±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089P CIL_00089P_0002 VISTA 17:12489717-13093070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275275 PNLDC1-001 nonsense_mediated_decay Homo_sapiens 0 1469
ENST00000392167 PNLDC1-002 protein_coding Homo_sapiens 0 1539
ENST00000610041 PNLDC1-003 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000610048 PNLDC1-004 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000610273 PNLDC1-201 protein_coding Homo_sapiens 0 1469

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