C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppression of tumorigenicity 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163727 St18-201 ENSMUSG00000033740 10090 + 1:6737575-6860940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonLiverMuscleOvaryENSMUST00000163727
Transcript ID Adrenal Bladder Brain Colon Liver Muscle Ovary
ENSMUST00000163727 0.122±0.06 0.005±0.00 1.897±1.18 0.143±0.08 0.004±0.00 0.007±0.00 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097E CIL_00097E_0002 VISTA 1:6429232-7030317
CIL_00053O CIL_00053O_0002 CGP 1:6487231-7173628

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276480 ST18-001 protein_coding Homo_sapiens 0 5009
ENST00000517580 ST18-002 protein_coding Homo_sapiens 0 1672
ENST00000518053 ST18-019 retained_intron Homo_sapiens 0 845
ENST00000521582 ST18-006 nonsense_mediated_decay Homo_sapiens 0 3068
ENST00000521824 ST18-007 nonsense_mediated_decay Homo_sapiens 0 3703
ENST00000522251 ST18-008 nonsense_mediated_decay Homo_sapiens 0 3637
ENST00000522861 ST18-020 retained_intron Homo_sapiens 0 501

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