C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CLIP associating protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163895 Clasp2-202 ENSMUSG00000033392 10090 + 9:113812600-113918136 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000163895
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000163895 31.890±0.00 8.161±0.00 2.042±0.08 1.378±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DD CIL_0003DD_0002 CGP 9:113812586-113977199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0005881 IDA cytoplasmic microtubule
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008017 IDA microtubule binding
GO:0016477 IMP cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137955 clasp1a-001 protein_coding Danio_rerio 0 442
ENST00000313350 CLASP2-007 protein_coding Homo_sapiens 0 1814
ENST00000333778 CLASP2-008 protein_coding Homo_sapiens 0 1602
ENST00000359576 CLASP2-201 protein_coding Homo_sapiens 0 2952
ENST00000399362 CLASP2-002 protein_coding Homo_sapiens 0 2964
ENST00000461133 CLASP2-010 protein_coding Homo_sapiens 0 2808
ENST00000464961 CLASP2-009 retained_intron Homo_sapiens 0 274
ENST00000468888 CLASP2-001 protein_coding Homo_sapiens 0 2964
ENST00000475576 CLASP2-023 protein_coding Homo_sapiens 0 678
ENST00000476251 CLASP2-017 nonsense_mediated_decay Homo_sapiens 0 712
ENST00000476433 CLASP2-016 processed_transcript Homo_sapiens 0 595
ENST00000480013 CLASP2-003 protein_coding Homo_sapiens 0 4996
ENST00000480385 CLASP2-021 protein_coding Homo_sapiens 0 595
ENST00000482896 CLASP2-013 processed_transcript Homo_sapiens 0 556
ENST00000485378 CLASP2-025 protein_coding Homo_sapiens 0 1094
ENST00000486796 CLASP2-015 retained_intron Homo_sapiens 0 211
ENST00000487200 CLASP2-006 protein_coding Homo_sapiens 0 1812
ENST00000487553 CLASP2-018 protein_coding Homo_sapiens 0 628
ENST00000491045 CLASP2-022 retained_intron Homo_sapiens 0 455
ENST00000494261 CLASP2-019 retained_intron Homo_sapiens 0 617
ENST00000496954 CLASP2-024 protein_coding Homo_sapiens 0 667
ENST00000498331 CLASP2-014 processed_transcript Homo_sapiens 0 453

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