C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6133
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164064 Gm6133-201 ENSMUSG00000090451 10090 + 18:78349754-78350701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164064
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164064 0.095±0.04 0.437±0.00 0.276±0.20 0.077±0.04 0.047±0.00 0.150±0.08 0.139±0.16 0.192±0.06 0.043±0.00 0.764±0.74 0.052±0.03 0.436±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093J CIL_00093J_0002 VISTA 18:77936924-78539279
CIL_0007VD CIL_0007VD_0002 VISTA 18:77966847-78568995
CIL_0008FC CIL_0008FC_0002 VISTA 18:78035782-78636542
CIL_0008CF CIL_0008CF_0002 VISTA 18:78154573-78756222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 451
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 475
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 486
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 464
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 435
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 521
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 414
ENST00000485656 RP11-273P3.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 527
ENST00000511559 RP11-115A14.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000560214 RP11-14C10.2-001 processed_pseudogene Homo_sapiens 4.2039e-45 185
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 370
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 1e-30 135

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