C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164096 Snrpe-002 ENSMUSG00000090553 10090 - 1:133606087-133610249 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLungENSMUST00000164096
Transcript ID Adrenal Breast Lung
ENSMUST00000164096 0.282±0.00 1.792±0.28 2.243±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005681 IEA spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338402 SNRPEP3-001 processed_pseudogene Homo_sapiens 0 267
ENST00000367208 SNRPE-004 protein_coding Homo_sapiens 0 217
ENST00000397592 SNRPEP2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000407465 SNRPEP6-001 processed_pseudogene Homo_sapiens 0 248
ENST00000414487 SNRPE-001 protein_coding Homo_sapiens 0 353
ENST00000425442 SNRPEP5-001 processed_pseudogene Homo_sapiens 0 281
ENST00000435815 SNRPEP4-001 processed_pseudogene Homo_sapiens 0 327
ENST00000436794 SNRPEP9-001 processed_pseudogene Homo_sapiens 6.02558e-44 180
ENST00000438350 SNRPEP7-001 processed_pseudogene Homo_sapiens 0 274
ENST00000469451 SNRPE-003 processed_transcript Homo_sapiens 0 213
ENST00000470492 SNRPE-006 processed_transcript Homo_sapiens 0 274
ENST00000475035 SNRPE-005 processed_transcript Homo_sapiens 0 255
ENST00000483099 SNRPE-002 processed_transcript Homo_sapiens 0 255
ENST00000604371 RP11-34P1.4-001 processed_pseudogene Homo_sapiens 0 265

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