C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PARP1 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164121 Parpbp-004 ENSMUSG00000035365 10090 - 10:88126210-88146878 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLungENSMUST00000164121
Transcript ID Colon Kidney Lung
ENSMUST00000164121 0.700±0.00 0.197±0.06 0.298±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WS CIL_0008WS_0002 VISTA 10:87568234-88170738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327680 PARPBP-001 protein_coding Homo_sapiens 0 453
ENST00000392909 PARPBP-012 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000392911 PARPBP-006 protein_coding Homo_sapiens 0 420
ENST00000392914 PARPBP-013 retained_intron Homo_sapiens 0 344
ENST00000412715 PARPBP-010 protein_coding Homo_sapiens 0 368
ENST00000417507 PARPBP-009 protein_coding Homo_sapiens 0 368
ENST00000537257 PARPBP-007 protein_coding Homo_sapiens 0 344
ENST00000541394 PARPBP-002 protein_coding Homo_sapiens 0 344
ENST00000541668 PARPBP-004 processed_transcript Homo_sapiens 0 381
ENST00000543784 PARPBP-008 protein_coding Homo_sapiens 2e-24 117

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