C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164202 Rbm20-201 ENSMUSG00000043639 10090 + 19:53677306-53867080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164202 0.293±0.22 0.063±0.00 0.381±0.03 0.222±0.03 0.432±0.00 0.140±0.02 25.545±1.44 0.249±0.02 0.061±0.02 0.416±0.21 8.246±3.22 0.231±0.06 0.519±0.34 0.101±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0002 VISTA 19:53415569-54017446
CIL_0006FC CIL_0006FC_0002 CGP 19:53600398-53867080
CIL_0000UM CIL_0000UM_0002 CGP 19:53677306-53929861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0007507 ISS heart development
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0033120 IMP positive regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369519 RBM20-001 protein_coding Homo_sapiens 0 1709
ENST00000471172 RBM20-006 processed_transcript Homo_sapiens 0 231
ENST00000480343 RBM20-007 processed_transcript Homo_sapiens 0 254

Loading