C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164470 Kars-203 ENSMUSG00000031948 10090 - 8:111993444-112011266 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungMuscleENSMUST00000164470
Transcript ID Adrenal Breast Colon Lung Muscle
ENSMUST00000164470 3.267±0.29 4.214±0.00 4.484±0.00 2.210±0.00 3.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D7 CIL_0002D7_0002 CGP 8:111966908-112011323
CIL_0003YT CIL_0003YT_0002 CGP 8:111993440-112020528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004824 ISS lysine-tRNA ligase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005739 ISS mitochondrion
GO:0006430 ISS lysyl-tRNA aminoacylation
GO:0015630 IEA microtubule cytoskeleton
GO:0015966 IEA diadenosine tetraphosphate biosynthetic process
GO:0016597 IEA amino acid binding
GO:0017101 IEA aminoacyl-tRNA synthetase multienzyme complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064924 kars-201 protein_coding Danio_rerio 0 885
ENSDART00000064926 kars-202 protein_coding Danio_rerio 0 885
ENSDART00000148429 kars-001 protein_coding Danio_rerio 0 863
ENST00000302445 KARS-001 protein_coding Homo_sapiens 0 2170
ENST00000319410 KARS-002 protein_coding Homo_sapiens 0 2381
ENST00000562875 KARS-006 nonsense_mediated_decay Homo_sapiens 0 791
ENST00000564578 KARS-004 nonsense_mediated_decay Homo_sapiens 0 1818
ENST00000566249 KARS-008 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000566560 KARS-003 retained_intron Homo_sapiens 0 1038
ENST00000566772 KARS-011 protein_coding Homo_sapiens 0 392
ENST00000568682 KARS-007 protein_coding Homo_sapiens 0 839
ENST00000569298 KARS-013 retained_intron Homo_sapiens 0 276
ENST00000570215 KARS-012 protein_coding Homo_sapiens 0 911
ENST00000571212 KARSP3-001 unprocessed_pseudogene Homo_sapiens 0 285

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