C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PARP1 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164803 Parpbp-003 ENSMUSG00000035365 10090 - 10:88133151-88146878 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyPlacentaENSMUST00000164803
Transcript ID Breast Colon Heart Kidney Placenta
ENSMUST00000164803 0.170±0.00 0.453±0.00 0.150±0.00 0.082±0.00 4.706±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WS CIL_0008WS_0002 VISTA 10:87568234-88170738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327680 PARPBP-001 protein_coding Homo_sapiens 0 377
ENST00000392909 PARPBP-012 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000392911 PARPBP-006 protein_coding Homo_sapiens 0 346
ENST00000392914 PARPBP-013 retained_intron Homo_sapiens 0 344
ENST00000412715 PARPBP-010 protein_coding Homo_sapiens 0 292
ENST00000417507 PARPBP-009 protein_coding Homo_sapiens 0 292
ENST00000537257 PARPBP-007 protein_coding Homo_sapiens 0 344
ENST00000541394 PARPBP-002 protein_coding Homo_sapiens 0 344
ENST00000541668 PARPBP-004 processed_transcript Homo_sapiens 0 377

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