C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164980 Coro1c-002 ENSMUSG00000004530 10090 - 5:113842436-113908705 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000164980
Transcript ID Adrenal Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000164980 12.134±2.93 11.187±2.73 27.903±7.06 2.130±0.43 0.858±0.00 10.768±4.83 3.549±0.00 0.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VQ CIL_0001VQ_0002 CGP 5:113817798-113908758
CIL_0001GO CIL_0001GO_0003 CGP 5:113842436-113993894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000147 TAS actin cortical patch assembly
GO:0005856 TAS cytoskeleton
GO:0006909 TAS phagocytosis
GO:0015629 IBA actin cytoskeleton
GO:0030036 IBA actin cytoskeleton organization
GO:0051015 IBA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039796 coro1cb-201 protein_coding Danio_rerio 0 318
ENSDART00000141446 coro1cb-001 protein_coding Danio_rerio 0 318
ENSDART00000004217 coro1ca-001 protein_coding Danio_rerio 0 279
ENSDART00000140640 coro1cb-002 protein_coding Danio_rerio 7e-29 134
ENST00000261401 CORO1C-001 protein_coding Homo_sapiens 0 813
ENST00000420959 CORO1C-201 protein_coding Homo_sapiens 0 813
ENST00000421578 CORO1C-009 protein_coding Homo_sapiens 0 813
ENST00000541050 CORO1C-007 protein_coding Homo_sapiens 0 813
ENST00000546571 CORO1C-014 protein_coding Homo_sapiens 0 558
ENST00000547170 CORO1C-015 retained_intron Homo_sapiens 0 453
ENST00000547294 CORO1C-021 protein_coding Homo_sapiens 0 555
ENST00000547361 CORO1C-018 retained_intron Homo_sapiens 0 344
ENST00000549384 CORO1C-003 processed_transcript Homo_sapiens 9e-33 145
ENST00000549772 CORO1C-008 protein_coding Homo_sapiens 0 811
ENST00000550032 CORO1C-016 protein_coding Homo_sapiens 0 556
ENST00000550542 CORO1C-002 nonsense_mediated_decay Homo_sapiens 0 1482
ENST00000551044 CORO1C-013 protein_coding Homo_sapiens 0 556
ENST00000551550 CORO1C-012 protein_coding Homo_sapiens 0 556
ENST00000552030 CORO1C-017 processed_transcript Homo_sapiens 0 311
ENST00000552871 CORO1C-011 protein_coding Homo_sapiens 0 342

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