C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 36, C3H type-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165114 Zfp36l1-202 ENSMUSG00000021127 10090 - 12:80108698-80112998 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165114
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165114 51.383±2.52 57.078±36.95 30.639±0.00 35.726±9.82 30.115±13.76 7.368±3.79 15.644±4.67 6.681±2.66 30.229±10.60 2.179±0.20 33.107±22.51 3.960±1.59 3.592±3.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JV CIL_0001JV_0003 CGP 12:79297351-80113013
CIL_0008VV CIL_0008VV_0002 VISTA 12:79546272-80149070
CIL_0002CK CIL_0002CK_0002 CGP 12:80107760-80260371

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 IDA nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0001570 IMP vasculogenesis
GO:0003342 IMP proepicardium development
GO:0003677 IEA DNA binding
GO:0003729 ISO mRNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 ISO cytosol
GO:0006402 ISO mRNA catabolic process
GO:0006417 IMP regulation of translation
GO:0006915 IMP apoptotic process
GO:0007507 IMP heart development
GO:0008283 IMP cell proliferation
GO:0021915 IMP neural tube development
GO:0033077 IGI T cell differentiation in thymus
GO:0035264 IMP multicellular organism growth
GO:0043488 ISO regulation of mRNA stability
GO:0046872 IEA metal ion binding
GO:0048568 IMP embryonic organ development
GO:0060710 IMP chorio-allantoic fusion
GO:0060712 IMP spongiotrophoblast layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336440 ZFP36L1-002 protein_coding Homo_sapiens 0 1650
ENST00000439696 ZFP36L1-001 protein_coding Homo_sapiens 0 1670
ENST00000553375 ZFP36L1-005 protein_coding Homo_sapiens 0 628
ENST00000555997 ZFP36L1-003 protein_coding Homo_sapiens 0 1472
ENST00000557022 ZFP36L1-006 protein_coding Homo_sapiens 0 774
ENST00000557086 ZFP36L1-004 protein_coding Homo_sapiens 0 795

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