C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 17138
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165702 Gm17138-001 ENSMUSG00000091942 10090 + 12:86714986-86715444 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLungOvaryPlacentaTestisENSMUST00000165702
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENSMUST00000165702 0.129±0.00 0.079±0.00 0.157±0.11 0.168±0.05 0.174±0.05 0.164±0.08 0.105±0.00 0.420±0.19 0.032±0.00 0.579±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VF CIL_0007VF_0002 VISTA 12:86500572-87103602
CIL_0008WP CIL_0008WP_0002 VISTA 12:86510598-87113301
CIL_000867 CIL_000867_0002 VISTA 12:86515545-87117582
CIL_0007VT CIL_0007VT_0002 VISTA 12:86594665-87199694
CIL_0003P3 CIL_0003P3_0002 CGP 12:86678700-86726460
CIL_000772 CIL_000772_0002 CGP 12:86700502-86763795

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335181 PKM-004 protein_coding Homo_sapiens 0 472
ENST00000389093 PKM-202 protein_coding Homo_sapiens 0 472
ENST00000449901 PKM-203 protein_coding Homo_sapiens 0 472
ENST00000454707 PKMP5-001 processed_pseudogene Homo_sapiens 0 383
ENST00000563986 PKM-014 retained_intron Homo_sapiens 0 276
ENST00000564440 PKM-009 retained_intron Homo_sapiens 0 403
ENST00000567118 PKM-005 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000569857 PKM-002 nonsense_mediated_decay Homo_sapiens 0 191

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