C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-like without CAAX 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166234 Rit1-003 ENSMUSG00000028057 10090 + 3:88716898-88731049 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000166234
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000166234 1.882±0.00 2.655±0.19 2.618±0.30 2.838±0.19 3.362±0.00 1.703±0.49 3.412±0.00 3.723±1.32 1.697±0.00 0.970±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368322 RIT1-002 protein_coding Homo_sapiens 0 320
ENST00000368323 RIT1-001 protein_coding Homo_sapiens 0 322
ENST00000461050 RIT1-003 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000462687 RIT1-004 retained_intron Homo_sapiens 0 215
ENST00000539040 RIT1-005 protein_coding Homo_sapiens 0 191
ENST00000609492 RIT1-006 protein_coding Homo_sapiens 0 320

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