C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly (A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166735 Papola-007 ENSMUSG00000021111 10090 + 12:105784757-105809709 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalPlacentaENSMUST00000166735
Transcript ID Adrenal Placenta
ENSMUST00000166735 26.112±0.00 44.101±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0002 CGP 12:105705982-105838944
CIL_0003HJ CIL_0003HJ_0002 CGP 12:105784694-106077410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 IDA:ISS polynucleotide adenylyltransferase activity
GO:0005524 ISS ATP binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0030145 ISS manganese ion binding
GO:0043631 IDA:ISS RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216277 PAPOLA-001 protein_coding Homo_sapiens 0 1435
ENST00000392990 PAPOLA-005 protein_coding Homo_sapiens 0 1362
ENST00000404991 PAPOLB-001 protein_coding Homo_sapiens 0 996
ENST00000553357 PAPOLA-011 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000553461 PAPOLA-025 protein_coding Homo_sapiens 0 813
ENST00000553689 PAPOLA-003 nonsense_mediated_decay Homo_sapiens 0 603
ENST00000554130 PAPOLA-012 processed_transcript Homo_sapiens 0 488
ENST00000554887 PAPOLA-010 processed_transcript Homo_sapiens 0 571
ENST00000555224 PAPOLA-024 retained_intron Homo_sapiens 0 723
ENST00000555626 PAPOLA-006 protein_coding Homo_sapiens 0 1282
ENST00000555912 PAPOLA-007 retained_intron Homo_sapiens 0 244
ENST00000556248 PAPOLA-014 processed_transcript Homo_sapiens 0 335
ENST00000556619 PAPOLA-013 protein_coding Homo_sapiens 0 483
ENST00000557320 PAPOLA-002 protein_coding Homo_sapiens 0 1509
ENST00000557406 PAPOLA-023 retained_intron Homo_sapiens 0 244
ENST00000557471 PAPOLA-004 protein_coding Homo_sapiens 0 1022

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