C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166793 Matr3-001 ENSMUSG00000037236 10090 + 18:35562158-35593835 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryTestisENSMUST00000166793
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000166793 2.392±1.32 1.475±0.53 2.648±0.00 9.349±0.00 1.805±0.31 1.284±0.27 1.940±0.47 1.770±1.02 2.779±0.48 4.324±1.39 5.170±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361059 MATR3-201 protein_coding Homo_sapiens 0 5481
ENST00000394800 MATR3-001 protein_coding Homo_sapiens 0 3633
ENST00000394805 MATR3-002 protein_coding Homo_sapiens 0 5618
ENST00000415279 RP11-90H3.1-001 processed_pseudogene Homo_sapiens 0 2521
ENST00000417774 RP1-172N19.3-001 processed_pseudogene Homo_sapiens 0 342
ENST00000433990 RP11-90H3.2-001 processed_pseudogene Homo_sapiens 0 656
ENST00000487828 RP11-262M14.2-001 processed_pseudogene Homo_sapiens 0 355
ENST00000502394 MATR3-026 protein_coding Homo_sapiens 0 795
ENST00000502422 MATR3-004 retained_intron Homo_sapiens 0 1554
ENST00000502499 MATR3-010 protein_coding Homo_sapiens 0 3398
ENST00000502929 MATR3-003 protein_coding Homo_sapiens 0 3633
ENST00000502944 MATR3-042 retained_intron Homo_sapiens 0 344
ENST00000503340 MATR3-044 protein_coding Homo_sapiens 0 741
ENST00000503811 MATR3-008 protein_coding Homo_sapiens 0 2968
ENST00000504023 MATR3-045 protein_coding Homo_sapiens 0 682
ENST00000504045 MATR3-011 protein_coding Homo_sapiens 0 2497
ENST00000504203 MATR3-012 protein_coding Homo_sapiens 0 2684
ENST00000504311 MATR3-029 protein_coding Homo_sapiens 0 560
ENST00000504643 MATR3-007 retained_intron Homo_sapiens 0 1533
ENST00000505016 MATR3-017 protein_coding Homo_sapiens 0 514
ENST00000505625 MATR3-005 retained_intron Homo_sapiens 0 3528
ENST00000506147 MATR3-018 protein_coding Homo_sapiens 0 292
ENST00000507860 MATR3-030 retained_intron Homo_sapiens 3e-25 119
ENST00000508689 MATR3-032 protein_coding Homo_sapiens 0 686
ENST00000509644 MATR3-025 protein_coding Homo_sapiens 0 534
ENST00000509918 MATR3-039 processed_transcript Homo_sapiens 0 366
ENST00000509990 MATR3-013 protein_coding Homo_sapiens 0 4233
ENST00000510056 MATR3-009 protein_coding Homo_sapiens 0 4019
ENST00000511249 MATR3-034 protein_coding Homo_sapiens 0 573
ENST00000511333 MATR3-040 retained_intron Homo_sapiens 0 322
ENST00000511378 MATR3-046 protein_coding Homo_sapiens 0 318
ENST00000511978 MATR3-037 processed_transcript Homo_sapiens 0 424
ENST00000512040 MATR3-041 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000512107 MATR3-019 protein_coding Homo_sapiens 4e-20 102
ENST00000512876 MATR3-028 protein_coding Homo_sapiens 0 728
ENST00000513121 MATR3-031 retained_intron Homo_sapiens 4e-29 132
ENST00000513678 MATR3-035 protein_coding Homo_sapiens 0 379
ENST00000514402 MATR3-038 retained_intron Homo_sapiens 0 272
ENST00000514488 MATR3-043 protein_coding Homo_sapiens 0 800
ENST00000514528 MATR3-033 protein_coding Homo_sapiens 0 625
ENST00000514694 MATR3-024 protein_coding Homo_sapiens 0 837
ENST00000515833 MATR3-036 protein_coding Homo_sapiens 0 1033
ENST00000618441 MATR3-202 protein_coding Homo_sapiens 0 5485
ENST00000620916 MATR3-203 protein_coding Homo_sapiens 0 1858

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