C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166877 Sox6-204 ENSMUSG00000051910 10090 - 7:115471344-116038744 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverLungOvaryPlacentaTestisENSMUST00000166877
Transcript ID Adipose Adrenal Brain Colon Liver Lung Ovary Placenta Testis
ENSMUST00000166877 0.220±0.00 0.139±0.03 4.308±0.00 0.208±0.00 5.011±0.00 0.103±0.00 0.348±0.03 0.186±0.13 1.958±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZR CIL_0003ZR_0002 CGP 7:114743694-116038744
CIL_0007MN CIL_0007MN_0003 UCNEbase 7:114963422-116027485
CIL_0007RU CIL_0007RU_0002 VISTA 7:115295838-115899194
CIL_0008U3 CIL_0008U3_0002 VISTA 7:115344905-115946551
CIL_0008HV CIL_0008HV_0002 VISTA 7:115445167-116046401
CIL_0007UO CIL_0007UO_0002 VISTA 7:115449542-116050857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005667 IC transcription factor complex
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0009791 IMP post-embryonic development
GO:0010468 IMP regulation of gene expression
GO:0016458 IMP gene silencing
GO:0021778 IMP oligodendrocyte cell fate specification
GO:0030097 IMP hemopoiesis
GO:0030218 IMP erythrocyte differentiation
GO:0042692 IDA muscle cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045165 IGI cell fate commitment
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048709 IMP oligodendrocyte differentiation
GO:0048821 IMP erythrocyte development
GO:0051216 IGI cartilage development
GO:0055007 IDA cardiac muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100998 sox6-201 protein_coding Danio_rerio 0 843
ENSDART00000150068 sox6-001 protein_coding Danio_rerio 0 843
ENSDART00000149843 sox6-003 retained_intron Danio_rerio 0 448
ENSDART00000006737 sox5-201 protein_coding Danio_rerio 0 283
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 0 283
ENST00000316399 SOX6-001 protein_coding Homo_sapiens 0 2074
ENST00000396356 SOX6-201 protein_coding Homo_sapiens 0 2074
ENST00000524520 SOX6-015 processed_transcript Homo_sapiens 0 204
ENST00000524650 SOX6-013 processed_transcript Homo_sapiens 0 627
ENST00000525259 SOX6-016 processed_transcript Homo_sapiens 0 204
ENST00000526673 SOX6-010 protein_coding Homo_sapiens 0 660
ENST00000527619 SOX6-003 protein_coding Homo_sapiens 0 2050
ENST00000527840 SOX6-007 processed_transcript Homo_sapiens 0 699
ENST00000528252 SOX6-002 protein_coding Homo_sapiens 0 2050
ENST00000528429 SOX6-012 protein_coding Homo_sapiens 0 2015
ENST00000529469 SOX6-008 protein_coding Homo_sapiens 0 394
ENST00000530378 SOX6-011 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000531297 SOX6-014 processed_transcript Homo_sapiens 0 405
ENST00000533411 SOX6-009 protein_coding Homo_sapiens 0 756
ENST00000533658 SOX6-006 processed_transcript Homo_sapiens 0 697
ENST00000533870 SOX6-005 retained_intron Homo_sapiens 0 699

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