C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166915 Snrpe-001 ENSMUSG00000090553 10090 - 1:133603871-133610291 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166915 29.710±11.37 3.595±1.28 79.064±35.02 161.919±44.26 15.465±4.45 14.789±3.53 22.583±2.62 28.334±7.25 133.271±132.58 24.168±6.23 28.232±2.91 67.039±121.54 330.510±340.39 48.128±36.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0042633 ISS hair cycle
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338402 SNRPEP3-001 processed_pseudogene Homo_sapiens 0 339
ENST00000367208 SNRPE-004 protein_coding Homo_sapiens 0 305
ENST00000397592 SNRPEP2-001 processed_pseudogene Homo_sapiens 0 394
ENST00000407465 SNRPEP6-001 processed_pseudogene Homo_sapiens 0 320
ENST00000414487 SNRPE-001 protein_coding Homo_sapiens 0 442
ENST00000420249 SNRPEP10-001 processed_pseudogene Homo_sapiens 0 261
ENST00000425442 SNRPEP5-001 processed_pseudogene Homo_sapiens 0 359
ENST00000435815 SNRPEP4-001 processed_pseudogene Homo_sapiens 0 411
ENST00000436794 SNRPEP9-001 processed_pseudogene Homo_sapiens 0 204
ENST00000438350 SNRPEP7-001 processed_pseudogene Homo_sapiens 0 274
ENST00000469451 SNRPE-003 processed_transcript Homo_sapiens 0 213
ENST00000470492 SNRPE-006 processed_transcript Homo_sapiens 0 363
ENST00000475035 SNRPE-005 processed_transcript Homo_sapiens 0 344
ENST00000483099 SNRPE-002 processed_transcript Homo_sapiens 0 344
ENST00000604371 RP11-34P1.4-001 processed_pseudogene Homo_sapiens 0 327

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