C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167004 Agpat6-201 ENSMUSG00000031545 10090 - 8:23172946-23208453 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167004
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167004 13.742±4.69 13.233±1.24 11.775±0.70 14.551±5.07 12.519±3.91 6.837±1.60 6.923±1.68 12.063±3.83 9.263±6.74 8.029±1.83 9.040±1.85 13.433±7.98 15.512±8.68 66.867±23.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002071 IMP glandular epithelial cell maturation
GO:0004366 NAS glycerol-3-phosphate O-acyltransferase activity
GO:0005783 IDA endoplasmic reticulum
GO:0006631 IMP fatty acid metabolic process
GO:0006637 IEA acyl-CoA metabolic process
GO:0006641 IMP triglyceride metabolic process
GO:0006656 IEA phosphatidylcholine biosynthetic process
GO:0007595 IMP lactation
GO:0008610 IMP lipid biosynthetic process
GO:0016020 IEA membrane
GO:0016024 IEA CDP-diacylglycerol biosynthetic process
GO:0019432 IMP triglyceride biosynthetic process
GO:0030176 NAS integral component of endoplasmic reticulum membrane
GO:0030879 IMP mammary gland development
GO:0040014 IMP regulation of multicellular organism growth
GO:0046339 IMP diacylglycerol metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282344 USP12-001 protein_coding Homo_sapiens 0.0003 53
ENST00000396987 AGPAT6-001 protein_coding Homo_sapiens 0 1893
ENST00000519853 AGPAT6-006 protein_coding Homo_sapiens 0 630
ENST00000519921 AGPAT6-011 retained_intron Homo_sapiens 0 628
ENST00000521806 AGPAT6-007 nonsense_mediated_decay Homo_sapiens 0 828
ENST00000523906 AGPAT6-008 retained_intron Homo_sapiens 0 512
ENST00000547237 RP11-388G3.1-001 processed_pseudogene Homo_sapiens 0 379

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