C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAM pointed domain containing ets transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167489 Spdef-202 ENSMUSG00000024215 10090 - 17:27714449-27728889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000167489
Transcript ID Adrenal Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000167489 0.058±0.04 0.148±0.00 1.373±0.00 0.042±0.01 0.027±0.00 0.038±0.02 0.020±0.00 1.078±0.51 0.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LR CIL_0004LR_0003 CGP 17:27655509-27728951
CIL_0004LT CIL_0004LT_0003 CGP 17:27714352-27820558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IDA nucleus
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0010454 IMP negative regulation of cell fate commitment
GO:0010455 IMP positive regulation of cell fate commitment
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060480 IDA lung goblet cell differentiation
GO:0060576 IMP intestinal epithelial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374037 SPDEF-001 protein_coding Homo_sapiens 0 817
ENST00000544425 SPDEF-201 protein_coding Homo_sapiens 0 385

Loading