C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rab40C, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167626 Rab40c-001 ENSMUSG00000025730 10090 - 17:25882114-25919652 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainPlacentaTestisENSMUST00000167626
Transcript ID Adrenal Bladder Brain Placenta Testis
ENSMUST00000167626 22.630±0.00 7.467±0.00 11.478±1.22 6.703±0.00 5.789±0.87

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016567 IEA protein ubiquitination
GO:0019003 IEA GDP binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218249 RAB40AL-001 protein_coding Homo_sapiens 0 405
ENST00000248139 RAB40C-001 protein_coding Homo_sapiens 0 1129
ENST00000269347 RAB40B-002 protein_coding Homo_sapiens 2e-28 132
ENST00000304236 RAB40A-001 protein_coding Homo_sapiens 0 422
ENST00000372633 RAB40A-002 protein_coding Homo_sapiens 0 422
ENST00000509637 RAB40C-006 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000535977 RAB40C-201 protein_coding Homo_sapiens 0 1129
ENST00000538492 RAB40C-202 protein_coding Homo_sapiens 0 1129
ENST00000538809 RAB40B-005 protein_coding Homo_sapiens 0 279
ENST00000539661 RAB40C-203 protein_coding Homo_sapiens 0 1129
ENST00000561781 RAB40C-002 retained_intron Homo_sapiens 0 688
ENST00000563109 RAB40C-003 protein_coding Homo_sapiens 0 551
ENST00000564703 RAB40C-005 protein_coding Homo_sapiens 0 399
ENST00000565511 RAB40C-004 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000566290 RAB40C-008 protein_coding Homo_sapiens 0 850
ENST00000568586 RAB40C-009 protein_coding Homo_sapiens 0 747
ENST00000569575 RAB40C-007 protein_coding Homo_sapiens 0 610
ENST00000571995 RAB40B-001 protein_coding Homo_sapiens 0 527
ENST00000572603 RAB40B-006 processed_transcript Homo_sapiens 1.99993e-41 172

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