C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167721 Actb-002 ENSMUSG00000029580 10090 - 5:142903501-142906702 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000167721
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000167721 191.982±0.00 1307.820±0.00 295.809±0.00 547.188±73.79 64.232±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V9 CIL_0002V9_0002 CGP 5:142866946-142906754
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 981
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 981
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 946
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 774
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 769
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 747
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 745
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 745
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 743
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 736
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 719
ENSDART00000080664 protein_coding Danio_rerio 0 713
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 660
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 529
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 512
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 398
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 390
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 294
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 5e-37 159
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 697
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 785
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1149
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1005
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 754
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1002
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 996
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 313
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 739
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 911
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 852
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 979
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 754
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 754
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 996
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 752
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 4.06377e-44 182
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 907
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 761
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 734
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 527
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 784
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 689
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 651
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 656
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 752
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 1147
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 580
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 721
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 619
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 200
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 412
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 732
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 754
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 399
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 4.06377e-44 182
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 911
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 985
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 833
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 697
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 1147
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 366
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 652
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 377
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 207
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 708
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 499
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 612
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 811
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 604
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 913
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 7e-18 97
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 481
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 483
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 695
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 525
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 926
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1005
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 1005
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1005
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 388
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1005
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 392
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1005
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 608
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1005
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 584
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 806
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 420
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1005

Loading