C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168321 SEMA6C-201 ENSMUSG00000101384 10090 + 3:95164374-95173316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168321
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168321 2.523±1.52 0.827±0.01 20.543±9.09 4.516±1.44 0.771±0.18 1.460±0.16 0.874±0.32 0.282±0.14 1.326±0.16 8.794±0.00 7.955±2.07 0.570±0.01 5.055±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000581 CIL_000581_0003 CGP 3:95139521-95174024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341697 SEMA6C-004 protein_coding Homo_sapiens 0 3042
ENST00000368912 SEMA6C-003 protein_coding Homo_sapiens 0 1339
ENST00000368913 SEMA6C-002 protein_coding Homo_sapiens 0 2259
ENST00000368914 SEMA6C-001 protein_coding Homo_sapiens 0 3042
ENST00000464018 SEMA6C-006 processed_transcript Homo_sapiens 0 375
ENST00000485745 SEMA6C-008 processed_transcript Homo_sapiens 1e-27 126
ENST00000613223 SEMA6C-201 protein_coding Homo_sapiens 0 1513
ENST00000621728 SEMA6C-202 protein_coding Homo_sapiens 0 1530

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