C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2300009A05 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168665 2300009A05Rik-001 ENSMUSG00000032403 10090 - 9:63394447-63399241 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000168665
Transcript ID Bladder Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000168665 3.238±0.25 1.280±0.00 3.081±0.65 4.299±0.00 2.140±0.47 7.051±1.83 10.944±0.00 3.875±2.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FO CIL_0008FO_0002 VISTA 9:62808235-63410238
CIL_00098T CIL_00098T_0002 VISTA 9:62831587-63433435
CIL_0008DX CIL_0008DX_0002 VISTA 9:62876076-63477276
CIL_0007L5 CIL_0007L5_0002 UCNEbase 9:63176391-63881226
CIL_0008V3 CIL_0008V3_0002 VISTA 9:63223990-63824533

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342683 C15orf61-001 protein_coding Homo_sapiens 0 758
ENST00000557807 C15orf61-003 protein_coding Homo_sapiens 0 268
ENST00000560041 C15orf61-002 processed_transcript Homo_sapiens 0 268
ENST00000560547 C15orf61-004 processed_transcript Homo_sapiens 0 200

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