C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168774 Etv5-002 ENSMUSG00000013089 10090 - 16:22381316-22436514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverOvaryPlacentaTestisENSMUST00000168774
Transcript ID Adrenal Colon Liver Ovary Placenta Testis
ENSMUST00000168774 6.669±0.27 5.796±2.40 0.618±0.45 1.756±0.54 0.672±0.31 0.378±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0006RI CIL_0006RI_0002 CGP 16:22244549-22439719
CIL_0006RL CIL_0006RL_0002 CGP 16:22381309-22657221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007626 IMP locomotory behavior
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0050807 IMP regulation of synapse organization
GO:0060762 IDA regulation of branching involved in mammary gland duct morphogenesis
GO:0071340 IMP skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306376 ETV5-001 protein_coding Homo_sapiens 0 1917
ENST00000413301 ETV5-005 protein_coding Homo_sapiens 0 351
ENST00000421809 ETV5-007 protein_coding Homo_sapiens 0 351
ENST00000422039 ETV5-006 protein_coding Homo_sapiens 0 351
ENST00000433149 ETV5-011 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000434744 ETV5-002 protein_coding Homo_sapiens 0 1917
ENST00000440773 ETV5-003 protein_coding Homo_sapiens 0 351
ENST00000447054 DGKG-008 processed_transcript Homo_sapiens 4e-32 141
ENST00000472868 ETV5-014 processed_transcript Homo_sapiens 3e-17 92
ENST00000475484 ETV5-008 retained_intron Homo_sapiens 8e-31 137
ENST00000476890 ETV5-004 processed_transcript Homo_sapiens 0 351
ENST00000480706 ETV5-012 processed_transcript Homo_sapiens 0 861
ENST00000484223 ETV5-009 processed_transcript Homo_sapiens 0 364
ENST00000489830 ETV5-010 processed_transcript Homo_sapiens 0 544
ENST00000495808 ETV5-013 retained_intron Homo_sapiens 2.00386e-43 178

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