C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169681 Eif4b-201 ENSMUSG00000058655 10090 + 15:102073773-102097172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169681
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169681 47.888±20.68 30.486±4.14 62.242±6.16 50.706±1.91 32.359±5.92 41.004±2.34 25.551±2.32 55.481±3.16 43.012±15.76 34.440±5.60 58.583±2.59 80.383±29.52 55.309±35.02 24.907±4.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TF CIL_0006TF_0002 CGP 15:102028216-102097172
CIL_00033N CIL_00033N_0003 CGP 15:102073773-102116401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003743 IEA translation initiation factor activity
GO:0006413 IEA translational initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127365 eif4bb-004 protein_coding Danio_rerio 0.000002 60
ENSDART00000151424 eif4bb-005 nonsense_mediated_decay Danio_rerio 0.000002 60
ENSDART00000128308 eif4bb-002 protein_coding Danio_rerio 0.000002 60
ENSDART00000021520 eif4bb-001 protein_coding Danio_rerio 0.000002 60
ENST00000262056 EIF4B-001 protein_coding Homo_sapiens 0 2911
ENST00000416702 EIF4BP2-001 processed_pseudogene Homo_sapiens 0 1312
ENST00000416762 EIF4B-005 protein_coding Homo_sapiens 0 1940
ENST00000420463 EIF4B-007 protein_coding Homo_sapiens 0 2390
ENST00000431936 EIF4BP6-001 processed_pseudogene Homo_sapiens 0 2218
ENST00000432132 EIF4BP3-001 processed_pseudogene Homo_sapiens 0 2185
ENST00000432307 EIF4BP7-001 processed_pseudogene Homo_sapiens 0 2170
ENST00000438308 EIF4BP9-001 processed_pseudogene Homo_sapiens 0 1668
ENST00000441847 EIF4BP4-001 processed_pseudogene Homo_sapiens 0 1149
ENST00000464704 EIF4BP8-001 processed_pseudogene Homo_sapiens 0 1916
ENST00000549077 EIF4B-010 nonsense_mediated_decay Homo_sapiens 0 743
ENST00000549481 EIF4B-015 protein_coding Homo_sapiens 0 776
ENST00000549592 EIF4B-008 retained_intron Homo_sapiens 0 396
ENST00000549645 EIF4B-017 processed_transcript Homo_sapiens 0 688
ENST00000550025 EIF4B-011 retained_intron Homo_sapiens 0 363
ENST00000550390 EIF4B-012 nonsense_mediated_decay Homo_sapiens 0 750
ENST00000550704 EIF4B-013 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000551002 EIF4B-014 protein_coding Homo_sapiens 0 691
ENST00000551527 EIF4B-009 processed_transcript Homo_sapiens 0 641
ENST00000552490 EIF4B-016 protein_coding Homo_sapiens 0 968
ENST00000553209 EIF4B-018 retained_intron Homo_sapiens 0 387
ENST00000567338 EIF4BP5-001 processed_pseudogene Homo_sapiens 0 1825

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