C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebellin 1 precursor protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169693 Cbln1-202 ENSMUSG00000031654 10090 - 8:87469238-87472386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000169693
Transcript ID Adipose Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000169693 0.039±0.02 7.309±0.00 0.108±0.08 0.154±0.06 0.043±0.02 0.040±0.03 0.043±0.00 0.161±0.08 0.170±0.11 0.988±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VO CIL_0002VO_0002 CGP 8:86841139-87472592
CIL_0008WB CIL_0008WB_0002 VISTA 8:86970549-87571379
CIL_0002VP CIL_0002VP_0002 CGP 8:87468854-87589424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0007157 IGI heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0009306 IMP protein secretion
GO:0021707 IGI cerebellar granule cell differentiation
GO:0030054 IEA cell junction
GO:0042803 IDA protein homodimerization activity
GO:0045202 IDA synapse
GO:0045211 IEA postsynaptic membrane
GO:0051965 IDA positive regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219197 CBLN1-001 protein_coding Homo_sapiens 0 1149
ENST00000536749 CBLN1-201 protein_coding Homo_sapiens 0 990
ENST00000564786 CBLN1-002 nonsense_mediated_decay Homo_sapiens 0 564

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