C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169922 Chd2-001 ENSMUSG00000078671 10090 - 7:73426691-73541746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169922 2.365±0.77 4.733±2.31 4.802±1.90 6.545±2.59 2.513±0.64 5.207±2.67 1.812±0.18 2.370±0.25 2.371±1.18 4.338±0.28 3.021±0.42 5.660±4.01 8.390±1.85 1.512±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001046 IMP core promoter sequence-specific DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007517 IMP muscle organ development
GO:0016568 IEA chromatin modification
GO:0042393 IDA histone binding
GO:0044822 IEA poly(A) RNA binding
GO:0060218 IMP hematopoietic stem cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028607 CHD6-201 protein_coding Danio_rerio 1e-16 95
ENSDART00000155549 CHD6-001 protein_coding Danio_rerio 1e-16 95
ENST00000394196 CHD2-201 protein_coding Homo_sapiens 0 8034
ENST00000420239 CHD2-202 protein_coding Homo_sapiens 0 2010

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