C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: visual system homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169934 Vsx2-002 ENSMUSG00000021239 10090 + 12:84569840-84595457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLungOvaryPlacentaTestisENSMUST00000169934
Transcript ID Adipose Bladder Brain Breast Kidney Lung Ovary Placenta Testis
ENSMUST00000169934 0.015±0.00 0.010±0.00 0.348±0.38 0.011±0.00 0.015±0.00 0.008±0.00 0.142±0.10 0.017±0.01 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000233 CIL_000233_0002 CGP 12:84451508-84595457
CIL_000232 CIL_000232_0002 CGP 12:84569762-84617466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008284 IMP positive regulation of cell proliferation
GO:0008285 IMP negative regulation of cell proliferation
GO:0043010 IGI camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IMP cell fate commitment
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060040 IMP retinal bipolar neuron differentiation
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261980 VSX2-001 protein_coding Homo_sapiens 0 1205

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