C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170476 Usp20-201 ENSMUSG00000026854 10090 + 2:30996042-31023582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170476
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170476 3.843±1.61 0.688±0.00 5.705±5.67 2.541±1.26 2.447±0.95 5.827±1.62 7.616±1.42 0.882±0.23 1.888±0.63 0.909±0.25 4.968±0.79 4.833±1.34 4.739±2.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M0 CIL_0002M0_0003 CGP 2:30972833-31023586
CIL_0006FN CIL_0006FN_0002 CGP 2:30982279-31142008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005737 IEA cytoplasm
GO:0005813 ISS centrosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006897 IEA endocytosis
GO:0008270 IEA zinc ion binding
GO:0008277 ISS regulation of G-protein coupled receptor protein signaling pathway
GO:0016579 ISS protein deubiquitination
GO:0070536 ISS protein K63-linked deubiquitination
GO:0071108 ISS protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315480 USP20-003 protein_coding Homo_sapiens 0 3160
ENST00000358355 USP20-002 protein_coding Homo_sapiens 0 3160
ENST00000372429 USP20-001 protein_coding Homo_sapiens 0 3160
ENST00000474895 USP20-006 processed_transcript Homo_sapiens 0 846

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